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        <h3 align="center">Results using <i>genomemap</i> Date: May 22, 2010</h3>

        <a href="http://sourceforge.net/projects/genomemap">
            <img src="sf_120x30_white.gif" alt="" align="top" width="120" height="30">
        </a>

        <h3>Plos ONE</h3>
        <ol>
            <li>
                <a href="plos_biology/PlosBiology.html#MapsTable"
                   title="Alignment of Genetic, Integrated and Physical Maps via Genes and Probes">
                    AlignmentMaps
                </a>&nbsp;|
                <!--<a href="inputdata_queries/PlosBiologyQuery.html#AlignMapCrossCounts"
                   title="Crossing counts of alignment maps via shared markers and shared probes">
                    Alignment Map Cross Counts
                </a>&nbsp;|-->
                <a href="plos_biology/PlosBiology.html#MapsTable"
                   title="Full and Minimum Contig Maps">
                    Physical Maps
                </a>
            </li>


            <li>
                <a href="plos_biology/PlosBiology.html#RepeatsDistMap"
                   title="Distribution of Repeats Structure across the chromosomes.">
                    Distribution of Repeats
                </a>&nbsp;
                <!--<a href="inputdata_queries/PlosBiologyQuery.html#RepeatsIndependenceTest"
                   title="Testing independence of repeat structures">
                    Independence Test of Repeats Structure
                </a>&nbsp;|
                <a href="inputdata_queries/PlosBiologyQuery.html#RepeatsHomogeneityTest"
                   title="Testing homogeneity of repeat structures across chromosomes in N. crassa genome">
                    Homogeneity Test of Repeats Structure
                </a>&nbsp;|-->
            </li>

            <!-- <li>
                 <a href="inputdata_queries/PlosBiologyQuery.html#ProgressCurve"
                    title="">
                     Progress Curve
                 </a>&nbsp;|
                 <a href="inputdata_queries/PlosBiologyQuery.html#IntgMapStat"
                    title="Statistics on the Integrated Physical Map">
                     Integrated Map Statistics
                 </a>&nbsp;|
                 <a href="inputdata_queries/PlosBiologyQuery.html#MapLogLHoods"
                    title="Log-Likelihoods of Genetic, Integrated, Physical and Sequence Maps">
                     Map Log-Likelihoods
                 </a>&nbsp;|

                 <a href="inputdata_queries/PlosBiologyQuery.html#GenomeSizeEstimation"
                    title="Estimated Sizes of Chromosomes of Neurospora crassa">
                     Genome Size Estimation
                 </a>&nbsp;|
                 <a href="inputdata_queries/PlosBiologyQuery.html#EmpericalMapFunction"
                    title="Emperical Mapping Function">
                     Emperical Mapping Function
                 </a>&nbsp;|
                 <a href="inputdata_queries/PlosBiologyQuery.html#CentromereEffect"
                    title="Centromere Effect">
                     Centromere Effect
                 </a>&nbsp;

             </li>-->

        </ol>

        <h3>Input Data Queries</h3>
        <ol>
            <li>
                <a href="inputdata_queries/AssignmentComparison.html">
                    Comparing Assignment Strategies
                </a>&nbsp;|
                <a href="SummaryStat.html#inputData">
                    Summary Statistics
                </a>
            </li>
            <li>
                <a href="BestMaps.html#BestGeneticMaps">
                    Best Genetic Maps
                </a>&nbsp;|
                <a href="BestMaps.html#BestPhysicalMaps">
                    Best Physical Maps
                </a>&nbsp;|
                <a href="BestMaps.html#BestIntegratedMaps">
                    Best Integrated Maps
                </a>
            </li>

        </ol>

        <h3>Test Data Queries</h3>
        <ol>
            <li>
                <a href="testdata_queries/TestData.html#geneCloneAssignment">
                    gene-cosmid assignments
                </a>&nbsp;|
                <a href="SummaryStat.html#testData">
                    Summary Statistics
                </a>
            </li>
        </ol>

        <h3>Data Specifications</h3>
        <ol>
            <li>
                <a href="input_data_validation_rules.txt">Input Data Validation Rules</a>
            </li>
            <li>
                <a href="test_data_design_rules.txt">Test Data Design Rules</a>
            </li>
            <li>
                <a href="glossary.txt">Glossary of terms</a>
            </li>
        </ol>

        <h3>Test Data</h3>
        <ol>
            <li>
                <a href="testdata/clone_names_1.txt">clone_names_1.txt</a>&nbsp;|
                <a href="testdata/clone_names_2.txt">clone_names_2.txt</a>
            </li>
            <li>
                <a href="testdata/probe_names_1.txt">probe_names_1.txt</a>&nbsp;|
                <a href="testdata/probe_names_2.txt">probe_names_2.txt</a>
            </li>
            <li>
                <a href="testdata/hybridization_data_1.txt">hybridization_data_1.txt</a>&nbsp;|
                <a href="testdata/hybridization_data_2.txt">hybridization_data_2.txt</a>
            </li>
            <li>
                <a href="testdata/gene_names_1.txt">gene_names_1.txt</a>&nbsp;|
                <a href="testdata/gene_names_2.txt">gene_names_2.txt</a>
            </li>
            <li>
                <a href="testdata/genotype_data_1.txt">genotype_data_1.txt</a>&nbsp;|
                <a href="testdata/genotype_data_2.txt">genotype_data_2.txt</a>
            </li>

            <li><a href="testdata/gw_clones.txt">gw_clones.txt</a></li>
            <li><a href="testdata/gw_ncu.txt">gw_ncu.txt</a></li>
            <li><a href="testdata/gw_gene_ncu.txt">gw_gene_ncu.txt</a></li>
            <li><a href="testdata/gw_contig_order.txt">gw_contig_order.txt</a></li>
            <li><a href="testdata/gw_compl_data.txt">gw_compl_data.txt</a></li>
        </ol>

        <h3>Input Data</h3>

        <ol>
            <li>
                <a href="inputdata/clone_names_1.txt">clone_names_1.txt</a>&nbsp;|
                <a href="inputdata/clone_names_2.txt">clone_names_2.txt</a>&nbsp;|
                <a href="inputdata/clone_names_3.txt">clone_names_3.txt</a>&nbsp;|
                <a href="inputdata/clone_names_4.txt">clone_names_4.txt</a>&nbsp;|
                <a href="inputdata/clone_names_5.txt">clone_names_5.txt</a>&nbsp;|
                <a href="inputdata/clone_names_6.txt">clone_names_6.txt</a>&nbsp;|
                <a href="inputdata/clone_names_7.txt">clone_names_7.txt</a>
            </li>

            <li>
                <a href="inputdata/probe_names_1.txt">probe_names_1.txt</a>&nbsp;|
                <a href="inputdata/probe_names_2.txt">probe_names_2.txt</a>&nbsp;|
                <a href="inputdata/probe_names_3.txt">probe_names_3.txt</a>&nbsp;|
                <a href="inputdata/probe_names_4.txt">probe_names_4.txt</a>&nbsp;|
                <a href="inputdata/probe_names_5.txt">probe_names_5.txt</a>&nbsp;|
                <a href="inputdata/probe_names_6.txt">probe_names_6.txt</a>&nbsp;|
                <a href="inputdata/probe_names_7.txt">probe_names_7.txt</a>
            </li>

            <li>
                <a href="inputdata/hybridization_data_1.txt">hybridization_data_1.txt</a>&nbsp;|
                <a href="inputdata/hybridization_data_2.txt">hybridization_data_2.txt</a>&nbsp;|
                <a href="inputdata/hybridization_data_3.txt">hybridization_data_3.txt</a>&nbsp;|
                <a href="inputdata/hybridization_data_4.txt">hybridization_data_4.txt</a>&nbsp;|
                <a href="inputdata/hybridization_data_5.txt">hybridization_data_5.txt</a>&nbsp;|
                <a href="inputdata/hybridization_data_6.txt">hybridization_data_6.txt</a>&nbsp;|
                <a href="inputdata/hybridization_data_7.txt">hybridization_data_7.txt</a>
            </li>

            <li>
                <a href="inputdata/gene_names_1.txt">gene_names_1.txt</a>&nbsp;|
                <a href="inputdata/gene_names_2.txt">gene_names_2.txt</a>&nbsp;|
                <a href="inputdata/gene_names_3.txt">gene_names_3.txt</a>&nbsp;|
                <a href="inputdata/gene_names_4.txt">gene_names_4.txt</a>&nbsp;|
                <a href="inputdata/gene_names_5.txt">gene_names_5.txt</a>&nbsp;|
                <a href="inputdata/gene_names_6.txt">gene_names_6.txt</a>&nbsp;|
                <a href="inputdata/gene_names_7.txt">gene_names_7.txt</a>
            </li>

            <li>
                <a href="inputdata/genotype_data_1.txt">genotype_data_1.txt</a>&nbsp;|
                <a href="inputdata/genotype_data_2.txt">genotype_data_2.txt</a>&nbsp;|
                <a href="inputdata/genotype_data_3.txt">genotype_data_3.txt</a>&nbsp;|
                <a href="inputdata/genotype_data_4.txt">genotype_data_4.txt</a>&nbsp;|
                <a href="inputdata/genotype_data_5.txt">genotype_data_5.txt</a>&nbsp;|
                <a href="inputdata/genotype_data_6.txt">genotype_data_6.txt</a>&nbsp;|
                <a href="inputdata/genotype_data_7.txt">genotype_data_7.txt</a>
            </li>
            <li><a href="inputdata/gw_clones.txt">gw_clones.txt</a></li>
            <li><a href="inputdata/gw_ncu.txt">gw_ncu.txt</a></li>
            <li><a href="inputdata/gw_gene_ncu.txt">gw_gene_ncu.txt</a></li>
            <li><a href="inputdata/gw_contig_order.txt">gw_contig_order.txt</a></li>
            <li><a href="inputdata/gw_compl_data.txt">gw_compl_data.txt</a></li>
        </ol>

        <h3>Original Data</h3>
        <ol>
            <li>
                <a href="original_data/clone_names_1.txt">clone_names_1.txt</a>&nbsp;|
                <a href="original_data/clone_names_2.txt">clone_names_2.txt</a>&nbsp;|
                <a href="original_data/clone_names_3.txt">clone_names_3.txt</a>&nbsp;|
                <a href="original_data/clone_names_4.txt">clone_names_4.txt</a>&nbsp;|
                <a href="original_data/clone_names_5.txt">clone_names_5.txt</a>&nbsp;|
                <a href="original_data/clone_names_6.txt">clone_names_6.txt</a>&nbsp;|
                <a href="original_data/clone_names_7.txt">clone_names_7.txt</a>
            </li>

            <li>
                <a href="original_data/probe_names_1.txt">probe_names_1.txt</a>&nbsp;|
                <a href="original_data/probe_names_2.txt">probe_names_2.txt</a>&nbsp;|
                <a href="original_data/probe_names_3.txt">probe_names_3.txt</a>&nbsp;|
                <a href="original_data/probe_names_4.txt">probe_names_4.txt</a>&nbsp;|
                <a href="original_data/probe_names_5.txt">probe_names_5.txt</a>&nbsp;|
                <a href="original_data/probe_names_6.txt">probe_names_6.txt</a>&nbsp;|
                <a href="original_data/probe_names_7.txt">probe_names_7.txt</a>
            </li>

            <li>
                <a href="original_data/hybridization_data_1.txt">hybridization_data_1.txt</a>&nbsp;|
                <a href="original_data/hybridization_data_2.txt">hybridization_data_2.txt</a>&nbsp;|
                <a href="original_data/hybridization_data_3.txt">hybridization_data_3.txt</a>&nbsp;|
                <a href="original_data/hybridization_data_4.txt">hybridization_data_4.txt</a>&nbsp;|
                <a href="original_data/hybridization_data_5.txt">hybridization_data_5.txt</a>&nbsp;|
                <a href="original_data/hybridization_data_6.txt">hybridization_data_6.txt</a>&nbsp;|
                <a href="original_data/hybridization_data_7.txt">hybridization_data_7.txt</a>
            </li>

            <li>
                <a href="original_data/gene_names_1.txt">gene_names_1.txt</a>&nbsp;|
                <a href="original_data/gene_names_2.txt">gene_names_2.txt</a>&nbsp;|
                <a href="original_data/gene_names_3.txt">gene_names_3.txt</a>&nbsp;|
                <a href="original_data/gene_names_4.txt">gene_names_4.txt</a>&nbsp;|
                <a href="original_data/gene_names_5.txt">gene_names_5.txt</a>&nbsp;|
                <a href="original_data/gene_names_6.txt">gene_names_6.txt</a>&nbsp;|
                <a href="original_data/gene_names_7.txt">gene_names_7.txt</a>
            </li>

            <li>
                <a href="original_data/genotype_data_1.txt">genotype_data_1.txt</a>&nbsp;|
                <a href="original_data/genotype_data_2.txt">genotype_data_2.txt</a>&nbsp;|
                <a href="original_data/genotype_data_3.txt">genotype_data_3.txt</a>&nbsp;|
                <a href="original_data/genotype_data_4.txt">genotype_data_4.txt</a>&nbsp;|
                <a href="original_data/genotype_data_5.txt">genotype_data_5.txt</a>&nbsp;|
                <a href="original_data/genotype_data_6.txt">genotype_data_6.txt</a>&nbsp;|
                <a href="original_data/genotype_data_7.txt">genotype_data_7.txt</a>
            </li>
            <li><a href="original_data/gw_clones.txt">gw_clones.txt</a></li>
            <li><a href="original_data/gw_ncu.txt">gw_ncu.txt</a></li>
            <li><a href="original_data/gw_gene_ncu.txt">gw_gene_ncu.txt</a></li>
            <li><a href="original_data/gw_contig_order.txt">gw_contig_order.txt</a></li>
            <li><a href="original_data/gw_compl_data.txt">gw_compl_data.txt</a></li>
            <li><a href="original_data/rflp_1998_fgsc.html">Published RFLP Data (1998)</a></li>
        </ol>


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